dcmdjpls(1)                       OFFIS DCMTK                      dcmdjpls(1)

NAME
       dcmdjpls - Decode JPEG-LS compressed DICOM file


SYNOPSIS
       dcmdjpls [options] dcmfile-in dcmfile-out

DESCRIPTION
       The  dcmdjpls  utility reads a JPEG-ls compressed DICOM image (dcmfile-
       in), decompresses the JPEG-LS data (i. e. conversion to a native  DICOM
       transfer  syntax)  and  writes  the  converted  image to an output file
       (dcmfile-out).

PARAMETERS
       dcmfile-in   DICOM input filename to be converted ("-" for stdin)

       dcmfile-out  DICOM output filename ("-" for stdout)

OPTIONS
   general options
         -h   --help
                print this help text and exit

              --version
                print version information and exit

              --arguments
                print expanded command line arguments

         -q   --quiet
                quiet mode, print no warnings and errors

         -v   --verbose
                verbose mode, print processing details

         -d   --debug
                debug mode, print debug information

         -ll  --log-level  [l]evel: string constant
                (fatal, error, warn, info, debug, trace)
                use level l for the logger

         -lc  --log-config  [f]ilename: string
                use config file f for the logger

   input options
       input file format:

         +f   --read-file
                read file format or data set (default)

         +fo  --read-file-only
                read file format only

         -f   --read-dataset
                read data set without file meta information

         # This option allows one to decompress JPEG-LS compressed DICOM objects that have
         # been stored as dataset without meta-header. Such a thing should not exist
         # since the transfer syntax cannot be reliably determined without meta-header,
         # but unfortunately it does.

   processing options
       planar configuration:

         +pr  --planar-restore
                restore original planar configuration (default)

         # If the compressed image is a color image, restore the planar
         # configuration as described in the Planar Configuration attribute.

         +pa  --planar-auto
                automatically determine planar configuration
                from SOP class and color space

         # If the compressed image is a color image, store in color-by-plane
         # planar configuration if required by the SOP class and photometric
         # interpretation. Hardcopy Color images are always stored color-by-
         # plane, and the revised Ultrasound image objects are stored color-by-
         # plane if the color model is YBR_FULL.  Everything else is stored
         # color-by-pixel.

         +px  --color-by-pixel
                always store color-by-pixel

         # If the compressed image is a color image, store in color-by-pixel
         # planar configuration.

         +pl  --color-by-plane
                always store color-by-plane

         # If the compressed image is a color image, store in color-by-plane
         # planar configuration.

       SOP Instance UID:

         +ud  --uid-default
                keep same SOP Instance UID (default)

         #  Never assigns a new SOP instance UID.

         +ua  --uid-always
                always assign new UID

         # Always assigns a new SOP instance UID.

       workaround options for incorrect JPEG-LS encodings:

         +wi  --workaround-incpl
                enable workaround for incomplete JPEG-LS data

       other processing options:

         +io  --ignore-offsettable
                ignore offset table when decompressing

   output options
       output file format:

         +F   --write-file
                write file format (default)

         -F   --write-dataset
                write data set without file meta information

       output transfer syntax:

         +te  --write-xfer-little
                write with explicit VR little endian (default)

         +tb  --write-xfer-big
                write with explicit VR big endian TS

         +ti  --write-xfer-implicit
                write with implicit VR little endian TS

       post-1993 value representations:

         +u   --enable-new-vr
                enable support for new VRs (UN/UT) (default)

         -u   --disable-new-vr
                disable support for new VRs, convert to OB

       group length encoding:

         +g=  --group-length-recalc
                recalculate group lengths if present (default)

         +g   --group-length-create
                always write with group length elements

         -g   --group-length-remove
                always write without group length elements

       length encoding in sequences and items:

         +e   --length-explicit
                write with explicit lengths (default)

         -e   --length-undefined
                write with undefined lengths

       data set trailing padding (not with --write-dataset):

         -p=  --padding-retain
                do not change padding (default if not --write-dataset)

         -p   --padding-off
                no padding (implicit if --write-dataset)

         +p   --padding-create  [f]ile-pad [i]tem-pad: integer
                align file on multiple of f bytes
                and items on multiple of i bytes

TRANSFER SYNTAXES
       dcmdjpls supports the following transfer syntaxes for  input  (dcmfile-
       in):

       LittleEndianImplicitTransferSyntax             1.2.840.10008.1.2
       LittleEndianExplicitTransferSyntax             1.2.840.10008.1.2.1
       DeflatedExplicitVRLittleEndianTransferSyntax   1.2.840.10008.1.2.1.99 (*)
       BigEndianExplicitTransferSyntax                1.2.840.10008.1.2.2
       JPEGLSLosslessTransferSyntax                   1.2.840.10008.1.2.4.80
       JPEGLSLossyTransferSyntax                      1.2.840.10008.1.2.4.81

       (*) if compiled with zlib support enabled

       dcmdjpls  supports the following transfer syntaxes for output (dcmfile-
       out):

       LittleEndianImplicitTransferSyntax             1.2.840.10008.1.2
       LittleEndianExplicitTransferSyntax             1.2.840.10008.1.2.1
       BigEndianExplicitTransferSyntax                1.2.840.10008.1.2.2

LOGGING
       The level of logging output of  the  various  command  line  tools  and
       underlying  libraries  can  be  specified by the user. By default, only
       errors and warnings are written to the  standard  error  stream.  Using
       option  --verbose  also  informational messages like processing details
       are reported. Option --debug can be used to get  more  details  on  the
       internal  activity,  e.g.  for debugging purposes. Other logging levels
       can be selected using option --log-level. In --quiet  mode  only  fatal
       errors  are reported. In such very severe error events, the application
       will usually terminate. For  more  details  on  the  different  logging
       levels, see documentation of module 'oflog'.

       In  case  the logging output should be written to file (optionally with
       logfile rotation), to syslog (Unix) or the event log  (Windows)  option
       --log-config  can  be  used.  This  configuration  file also allows for
       directing only certain messages to a particular output stream  and  for
       filtering  certain  messages  based  on the module or application where
       they are generated.  An  example  configuration  file  is  provided  in
       <etcdir>/logger.cfg.

COMMAND LINE
       All  command  line  tools  use  the  following notation for parameters:
       square brackets enclose optional  values  (0-1),  three  trailing  dots
       indicate  that multiple values are allowed (1-n), a combination of both
       means 0 to n values.

       Command line options are distinguished from parameters by a leading '+'
       or '-' sign, respectively. Usually, order and position of command  line
       options  are  arbitrary  (i.e.  they  can appear anywhere). However, if
       options are mutually exclusive the rightmost appearance is  used.  This
       behavior  conforms  to  the  standard  evaluation  rules of common Unix
       shells.

       In addition, one or more command files can be specified  using  an  '@'
       sign  as  a  prefix to the filename (e.g. @command.txt). Such a command
       argument is replaced by the content  of  the  corresponding  text  file
       (multiple  whitespaces  are  treated  as a single separator unless they
       appear between two quotation marks) prior to  any  further  evaluation.
       Please  note  that  a command file cannot contain another command file.
       This simple but effective  approach  allows  one  to  summarize  common
       combinations  of  options/parameters  and  avoids longish and confusing
       command lines (an example is provided in file <datadir>/dumppat.txt).

ENVIRONMENT
       The dcmdjpls utility will  attempt  to  load  DICOM  data  dictionaries
       specified  in the DCMDICTPATH environment variable. By default, i.e. if
       the  DCMDICTPATH  environment   variable   is   not   set,   the   file
       <datadir>/dicom.dic  will be loaded unless the dictionary is built into
       the application (default for Windows).

       The  default  behavior  should  be  preferred   and   the   DCMDICTPATH
       environment  variable  only used when alternative data dictionaries are
       required. The DCMDICTPATH environment variable has the same  format  as
       the  Unix  shell PATH variable in that a colon (':') separates entries.
       On Windows systems, a semicolon (';') is used as a separator. The  data
       dictionary  code  will  attempt  to  load  each  file  specified in the
       DCMDICTPATH environment variable. It is an error if no data  dictionary
       can be loaded.

SEE ALSO
       dcmcjpls(1)

COPYRIGHT
       Copyright  (C)  2009-2024  by OFFIS e.V., Escherweg 2, 26121 Oldenburg,
       Germany.

Version 3.6.9                   Wed Dec 11 2024                    dcmdjpls(1)
